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6-Fluoroindole (CAS number 399-51-9) is a fluorinated (6-position) indole, a benzene ring fused pyrrole heterocycle. 6-Fluoroindole is an antimicrobial which works by interfering with the quorum sensing system of the pathogens. 6-Fluoroindole inhibits the biofilm formation that causes infections.
6-Fluoroindole can be easily functionalized with Bpin groups (pinacol boronate) at 2-, 3-, 4-, 5- and 7-positions selectively with iridium-catalyzed borylation and bismuth-catalyzed protodeboronation. The modification to 6-fluoroindole allows late-stage functionalization on different positions of the molecule, expanding the molecular library for drug discovery.
6-Fluoroindole is also used to label bacteria cells (Escherichia coli) in order to study the protein-protein interaction in vitro with 19F NMR and 15N-1H HSQC (heteronuclear single quantum coherence) NMR.
General Information
| CAS Number | 399-51-9 |
| Chemical Formula | C8H6FN |
| Full Name | 6-Fluoro-1H-indole |
| Molecular Weight | 135.14 g/mol |
| Synonyms | N/A |
| Classification / Family | Fluorinated building block, Heterocyclic building block, APIs, OLEDs, Semiconductors, DSSCs |
Chemical Structure

Product Details
| Purity | 98% |
| Melting Point | Tm = 72 °C – 76 °C |
| Appearance | Off-white powder |


